reset upstream subtrees to yocto 2.6

Reset the following subtrees on thud HEAD:

  poky: 87e3a9739d
  meta-openembedded: 6094ae18c8
  meta-security: 31dc4e7532
  meta-raspberrypi: a48743dc36
  meta-xilinx: c42016e2e6

Also re-apply backports that didn't make it into thud:
  poky:
    17726d0 systemd-systemctl-native: handle Install wildcards

  meta-openembedded:
    4321a5d libtinyxml2: update to 7.0.1
    042f0a3 libcereal: Add native and nativesdk classes
    e23284f libcereal: Allow empty package
    030e8d4 rsyslog: curl-less build with fmhttp PACKAGECONFIG
    179a1b9 gtest: update to 1.8.1

Squashed OpenBMC subtree compatibility updates:
  meta-aspeed:
    Brad Bishop (1):
          aspeed: add yocto 2.6 compatibility

  meta-ibm:
    Brad Bishop (1):
          ibm: prepare for yocto 2.6

  meta-ingrasys:
    Brad Bishop (1):
          ingrasys: set layer compatibility to yocto 2.6

  meta-openpower:
    Brad Bishop (1):
          openpower: set layer compatibility to yocto 2.6

  meta-phosphor:
    Brad Bishop (3):
          phosphor: set layer compatibility to thud
          phosphor: libgpg-error: drop patches
          phosphor: react to fitimage artifact rename

    Ed Tanous (4):
          Dropbear: upgrade options for latest upgrade
          yocto2.6: update openssl options
          busybox: remove upstream watchdog patch
          systemd: Rebase CONFIG_CGROUP_BPF patch

Change-Id: I7b1fe71cca880d0372a82d94b5fd785323e3a9e7
Signed-off-by: Brad Bishop <bradleyb@fuzziesquirrel.com>
diff --git a/poky/meta/recipes-gnome/gtk-doc/files/0001-Do-not-hardocode-paths-to-perl-python-in-scripts.patch b/poky/meta/recipes-gnome/gtk-doc/files/0001-Do-not-hardocode-paths-to-perl-python-in-scripts.patch
index 2fe3ab9..19e05f1 100644
--- a/poky/meta/recipes-gnome/gtk-doc/files/0001-Do-not-hardocode-paths-to-perl-python-in-scripts.patch
+++ b/poky/meta/recipes-gnome/gtk-doc/files/0001-Do-not-hardocode-paths-to-perl-python-in-scripts.patch
@@ -1,7 +1,7 @@
-From 928102874bc2339a1d57c6b178877e0c6002cb3a Mon Sep 17 00:00:00 2001
+From 80e6aff72affa6d92f5abd7ff6353dfc4a7bff38 Mon Sep 17 00:00:00 2001
 From: Alexander Kanavin <alex.kanavin@gmail.com>
 Date: Wed, 31 Aug 2016 16:44:46 +0300
-Subject: [PATCH 1/3] Do not hardocode paths to perl/python in scripts.
+Subject: [PATCH] Do not hardocode paths to perl/python in scripts.
 
 Doing so when the interpreters are somewhere deep in a sysroot directory
 can reach the shebang line limit, and resulting scripts wouldn't work
@@ -35,7 +35,7 @@
  #
  # gtk-doc - GTK DocBook documentation generator.
 diff --git a/gtkdoc-depscan.in b/gtkdoc-depscan.in
-index 9bfaf30..aadc952 100644
+index 9bfaf30..aadc952 100755
 --- a/gtkdoc-depscan.in
 +++ b/gtkdoc-depscan.in
 @@ -1,4 +1,4 @@
@@ -45,7 +45,7 @@
  from __future__ import print_function
  
 diff --git a/gtkdoc-fixxref.in b/gtkdoc-fixxref.in
-index 0ea02d4..bdd443a 100755
+index 44f6bd1..26fbd93 100755
 --- a/gtkdoc-fixxref.in
 +++ b/gtkdoc-fixxref.in
 @@ -1,4 +1,4 @@
@@ -65,7 +65,7 @@
  #
  # gtk-doc - GTK DocBook documentation generator.
 diff --git a/gtkdoc-mkhtml.in b/gtkdoc-mkhtml.in
-index 0d0a15d..914ff55 100644
+index 0d0a15d..914ff55 100755
 --- a/gtkdoc-mkhtml.in
 +++ b/gtkdoc-mkhtml.in
 @@ -1,4 +1,4 @@
@@ -75,7 +75,7 @@
  #
  # gtk-doc - GTK DocBook documentation generator.
 diff --git a/gtkdoc-mkman.in b/gtkdoc-mkman.in
-index c5445cd..65db71a 100644
+index c5445cd..65db71a 100755
 --- a/gtkdoc-mkman.in
 +++ b/gtkdoc-mkman.in
 @@ -1,4 +1,4 @@
@@ -115,7 +115,7 @@
  #
  # gtk-doc - GTK DocBook documentation generator.
 diff --git a/gtkdoc-scangobj.in b/gtkdoc-scangobj.in
-index 4cbe130..52c2c24 100644
+index 4cbe130..52c2c24 100755
 --- a/gtkdoc-scangobj.in
 +++ b/gtkdoc-scangobj.in
 @@ -1,4 +1,4 @@
@@ -125,18 +125,15 @@
  #
  # gtk-doc - GTK DocBook documentation generator.
 diff --git a/tests/tools.sh.in b/tests/tools.sh.in
-index 4d301d0..565fc1e 100644
+index 343844a..9dc6692 100644
 --- a/tests/tools.sh.in
 +++ b/tests/tools.sh.in
-@@ -31,7 +31,7 @@ done
- # TODO: test python 2 and 3 (python3 -mcompileall gtkdoc/*.py)
- for file in gtkdoc-check gtkdoc-depscan gtkdoc-fixxref gtkdoc-mkdb gtkdoc-mkhtml gtkdoc-mkman gtkdoc-mkpdf gtkdoc-rebase gtkdoc-scangobj; do
+@@ -30,7 +30,7 @@ done
+ # TODO: also test the module files
+ for file in gtkdoc-check gtkdoc-depscan gtkdoc-fixxref gtkdoc-mkdb gtkdoc-mkhtml gtkdoc-mkhtml2 gtkdoc-mkman gtkdoc-mkpdf gtkdoc-rebase gtkdoc-scangobj; do
      fullfile=`which $file`
 -    @PYTHON@ -m py_compile $fullfile
 +    python3 -m py_compile $fullfile
      if test $? != 0 ; then failed=`expr $failed + 1`; fi
      tested=`expr $tested + 1`
  done
--- 
-2.14.1
-
diff --git a/poky/meta/recipes-gnome/gtk-doc/files/no-clobber.patch b/poky/meta/recipes-gnome/gtk-doc/files/no-clobber.patch
index 0fa22b2..d169547 100644
--- a/poky/meta/recipes-gnome/gtk-doc/files/no-clobber.patch
+++ b/poky/meta/recipes-gnome/gtk-doc/files/no-clobber.patch
@@ -1,3 +1,8 @@
+From 8bc4c1f169f89bc5531da5b7e892b8f20e0f9a18 Mon Sep 17 00:00:00 2001
+From: Ross Burton <ross.burton@intel.com>
+Date: Wed, 21 Mar 2018 14:47:29 +0000
+Subject: [PATCH] gtk-doc: don't regenerate gtk-doc in do_install
+
 In out-of-tree builds gtk-doc's setup-build target copies all the content from $srcdir to $builddir.
 
 However, if some of this content is regenerated at configure time this can happen:
@@ -16,12 +21,20 @@
 Upstream-Status: Submitted [https://bugzilla.gnome.org/show_bug.cgi?id=794571]
 Signed-off-by: Ross Burton <ross.burton@intel.com>
 
-diff --git a/gtk-doc.make b/gtk-doc.make
-index f87eaab..246f3c0 100644
---- a/gtk-doc.make
-+++ b/gtk-doc.make
-@@ -113,3 +113,3 @@ setup-build.stamp:
+---
+ buildsystems/autotools/gtk-doc.make | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/buildsystems/autotools/gtk-doc.make b/buildsystems/autotools/gtk-doc.make
+index 7d9a27f..8cb336d 100644
+--- a/buildsystems/autotools/gtk-doc.make
++++ b/buildsystems/autotools/gtk-doc.make
+@@ -111,7 +111,7 @@ setup-build.stamp:
+ 	      destdir=`dirname $(abs_builddir)/$$file`; \
+ 	      test -d "$$destdir" || mkdir -p "$$destdir"; \
  	      test -f $(abs_srcdir)/$$file && \
 -	        cp -pf $(abs_srcdir)/$$file $(abs_builddir)/$$file || true; \
 +	        cp -pn $(abs_srcdir)/$$file $(abs_builddir)/$$file || true; \
  	    done; \
+ 	  fi; \
+ 	fi
diff --git a/poky/meta/recipes-gnome/gtk-doc/files/pkg-config-native.patch b/poky/meta/recipes-gnome/gtk-doc/files/pkg-config-native.patch
index bfbc777..9b128e1 100644
--- a/poky/meta/recipes-gnome/gtk-doc/files/pkg-config-native.patch
+++ b/poky/meta/recipes-gnome/gtk-doc/files/pkg-config-native.patch
@@ -1,7 +1,7 @@
-From 5f145621b4780cfd6a5632fcc97c45f572938efc Mon Sep 17 00:00:00 2001
+From 04af15322f677db42ecc2acc465334a04de9a871 Mon Sep 17 00:00:00 2001
 From: Ross Burton <ross.burton@intel.com>
 Date: Mon, 5 Sep 2016 22:25:44 +0100
-Subject: [PATCH 5/5] Use native pkg-config when looking for gtk-doc.
+Subject: [PATCH] Use native pkg-config when looking for gtk-doc.
 
 Upstream-Status: Inappropriate
 Signed-off-by: Ross Burton <ross.burton@intel.com>
@@ -10,10 +10,10 @@
  gtk-doc.m4 | 7 ++++++-
  1 file changed, 6 insertions(+), 1 deletion(-)
 
-Index: gtk-doc-1.27/gtk-doc.m4
-===================================================================
---- gtk-doc-1.27.orig/gtk-doc.m4
-+++ gtk-doc-1.27/gtk-doc.m4
+diff --git a/gtk-doc.m4 b/gtk-doc.m4
+index 2d12f01..e5afc3f 100644
+--- a/buildsystems/autotools/gtk-doc.m4
++++ b/buildsystems/autotools/gtk-doc.m4
 @@ -25,7 +25,7 @@
  # Macro appear in them. The GNU General Public License (GPL) does govern
  # all other use of the material that constitutes the Autoconf Macro.
diff --git a/poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.27.bb b/poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.29.bb
similarity index 93%
rename from poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.27.bb
rename to poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.29.bb
index 4552811..2c4ee17 100644
--- a/poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.27.bb
+++ b/poky/meta/recipes-gnome/gtk-doc/gtk-doc_1.29.bb
@@ -18,8 +18,8 @@
 PACKAGECONFIG[working-scripts] = "--with-highlight=source-highlight,--with-highlight=no,libxslt-native xmlto-native source-highlight-native python3-six"
 PACKAGECONFIG[tests] = "--enable-tests,--disable-tests,glib-2.0"
 
-SRC_URI[archive.md5sum] = "b29949e0964762e474b706ce22171602"
-SRC_URI[archive.sha256sum] = "e26bd3f7080c749b1cb66c46c6bf8239e2f320a949964fb9c6d56e1b0c6d9a6f"
+SRC_URI[archive.md5sum] = "df26a38c209b3d7358f26268fcbdb9e3"
+SRC_URI[archive.sha256sum] = "14578e002496567276d310a62c9ffd6c56ee8806ce5079ffb0b81c4111f586b1"
 SRC_URI += "file://0001-Do-not-hardocode-paths-to-perl-python-in-scripts.patch \
            file://0001-Do-not-error-out-if-xsltproc-is-not-found.patch \
            file://conditionaltests.patch \