reset upstream subtrees to yocto 2.6

Reset the following subtrees on thud HEAD:

  poky: 87e3a9739d
  meta-openembedded: 6094ae18c8
  meta-security: 31dc4e7532
  meta-raspberrypi: a48743dc36
  meta-xilinx: c42016e2e6

Also re-apply backports that didn't make it into thud:
  poky:
    17726d0 systemd-systemctl-native: handle Install wildcards

  meta-openembedded:
    4321a5d libtinyxml2: update to 7.0.1
    042f0a3 libcereal: Add native and nativesdk classes
    e23284f libcereal: Allow empty package
    030e8d4 rsyslog: curl-less build with fmhttp PACKAGECONFIG
    179a1b9 gtest: update to 1.8.1

Squashed OpenBMC subtree compatibility updates:
  meta-aspeed:
    Brad Bishop (1):
          aspeed: add yocto 2.6 compatibility

  meta-ibm:
    Brad Bishop (1):
          ibm: prepare for yocto 2.6

  meta-ingrasys:
    Brad Bishop (1):
          ingrasys: set layer compatibility to yocto 2.6

  meta-openpower:
    Brad Bishop (1):
          openpower: set layer compatibility to yocto 2.6

  meta-phosphor:
    Brad Bishop (3):
          phosphor: set layer compatibility to thud
          phosphor: libgpg-error: drop patches
          phosphor: react to fitimage artifact rename

    Ed Tanous (4):
          Dropbear: upgrade options for latest upgrade
          yocto2.6: update openssl options
          busybox: remove upstream watchdog patch
          systemd: Rebase CONFIG_CGROUP_BPF patch

Change-Id: I7b1fe71cca880d0372a82d94b5fd785323e3a9e7
Signed-off-by: Brad Bishop <bradleyb@fuzziesquirrel.com>
diff --git a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-Check-for-MAP_SYNC-in-sys-mman.h.patch b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-Check-for-MAP_SYNC-in-sys-mman.h.patch
new file mode 100644
index 0000000..75b227a
--- /dev/null
+++ b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-Check-for-MAP_SYNC-in-sys-mman.h.patch
@@ -0,0 +1,52 @@
+From f41ef1f06d428c81fcdef73d896dfc7ceda1809c Mon Sep 17 00:00:00 2001
+From: Khem Raj <raj.khem@gmail.com>
+Date: Thu, 23 Aug 2018 04:59:39 +0000
+Subject: [PATCH] Check for MAP_SYNC in sys/mman.h
+
+Not all arches have wired MAP_SYNC e.g. mips
+which have conflicts with definition, so checking
+a generic file is going to mis-configure xfsprogs
+for such arches.
+
+libc now has added the relevant macros to
+sys/mman.h, and returns the right values for arches
+where its implemented and nothing for others
+unlike asm-generic/mman.h which only checks
+for kernel headers and ignored arches
+
+Upstream-Status: Pending
+
+Signed-off-by: Khem Raj <raj.khem@gmail.com>
+---
+ include/linux.h       | 3 +--
+ m4/package_libcdev.m4 | 3 +--
+ 2 files changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/include/linux.h b/include/linux.h
+index 1998941..7e5c9ab 100644
+--- a/include/linux.h
++++ b/include/linux.h
+@@ -331,8 +331,7 @@ fsmap_advance(
+ #define MAP_SYNC 0
+ #define MAP_SHARED_VALIDATE 0
+ #else
+-#include <asm-generic/mman.h>
+-#include <asm-generic/mman-common.h>
++#include <sys/mman.h>
+ #endif /* HAVE_MAP_SYNC */
+ 
+ #endif	/* __XFS_LINUX_H__ */
+diff --git a/m4/package_libcdev.m4 b/m4/package_libcdev.m4
+index 0a6b514..2b47d2f 100644
+--- a/m4/package_libcdev.m4
++++ b/m4/package_libcdev.m4
+@@ -335,8 +335,7 @@ AC_DEFUN([AC_HAVE_STATFS_FLAGS],
+ AC_DEFUN([AC_HAVE_MAP_SYNC],
+   [ AC_MSG_CHECKING([for MAP_SYNC])
+     AC_TRY_COMPILE([
+-#include <asm-generic/mman.h>
+-#include <asm-generic/mman-common.h>
++#include <sys/mman.h>
+     ], [
+         int flags = MAP_SYNC | MAP_SHARED_VALIDATE;
+     ], have_map_sync=yes
diff --git a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-build-Check-for-sync_file_range-libc-function.patch b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-build-Check-for-sync_file_range-libc-function.patch
index d8ff555..231da80 100644
--- a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-build-Check-for-sync_file_range-libc-function.patch
+++ b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0001-build-Check-for-sync_file_range-libc-function.patch
@@ -1,14 +1,14 @@
-From ae7172194d3fbb563ff8bbe7c02d34f1bd0e5ec9 Mon Sep 17 00:00:00 2001
+From f8a22f16c03e51d3c779b12f37d362faaa0ecf31 Mon Sep 17 00:00:00 2001
 From: Khem Raj <raj.khem@gmail.com>
 Date: Wed, 31 Jan 2018 21:28:53 -0800
 Subject: [PATCH] build: Check for sync_file_range libc function
 
 glibc 2.27 now has sync_file_range()
 
-Signed-off-by: Khem Raj <raj.khem@gmail.com>
----
 Upstream-Status: Pending
 
+Signed-off-by: Khem Raj <raj.khem@gmail.com>
+---
  include/builddefs.in | 1 +
  io/Makefile          | 5 ++++-
  io/io.h              | 2 +-
@@ -16,10 +16,10 @@
  4 files changed, 9 insertions(+), 2 deletions(-)
 
 diff --git a/include/builddefs.in b/include/builddefs.in
-index 92d5076..504225a 100644
+index b895949..a388c83 100644
 --- a/include/builddefs.in
 +++ b/include/builddefs.in
-@@ -105,6 +105,7 @@ HAVE_FIEMAP = @have_fiemap@
+@@ -95,6 +95,7 @@ HAVE_FIEMAP = @have_fiemap@
  HAVE_PREADV = @have_preadv@
  HAVE_PWRITEV2 = @have_pwritev2@
  HAVE_COPY_FILE_RANGE = @have_copy_file_range@
@@ -28,10 +28,10 @@
  HAVE_SYNCFS = @have_syncfs@
  HAVE_READDIR = @have_readdir@
 diff --git a/io/Makefile b/io/Makefile
-index 6725936..1876e95 100644
+index 00ede48..dd001b0 100644
 --- a/io/Makefile
 +++ b/io/Makefile
-@@ -59,10 +59,13 @@ CFILES += inject.c resblks.c
+@@ -60,10 +60,13 @@ CFILES += inject.c resblks.c
  LCFLAGS += -DHAVE_INJECT -DHAVE_RESBLKS
  endif
  
@@ -47,10 +47,10 @@
  ifeq ($(HAVE_SYNC_FILE_RANGE),yes)
  CFILES += sync_file_range.c
 diff --git a/io/io.h b/io/io.h
-index 3862985..79ddc7b 100644
+index e1f3d95..fe2e6a2 100644
 --- a/io/io.h
 +++ b/io/io.h
-@@ -158,7 +158,7 @@ extern void		fiemap_init(void);
+@@ -151,7 +151,7 @@ extern void		fiemap_init(void);
  #define fiemap_init()	do { } while (0)
  #endif
  
@@ -60,23 +60,20 @@
  #else
  #define copy_range_init()	do { } while (0)
 diff --git a/io/sync_file_range.c b/io/sync_file_range.c
-index 7e4f3e6..aafea01 100644
+index 30bbc93..6c49d73 100644
 --- a/io/sync_file_range.c
 +++ b/io/sync_file_range.c
-@@ -16,6 +16,7 @@
-  * Inc.,  51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+@@ -4,6 +4,7 @@
+  * All Rights Reserved.
   */
  
 +#ifndef HAVE_COPY_FILE_RANGE
  #include "command.h"
  #include "input.h"
  #include "init.h"
-@@ -104,3 +105,5 @@ sync_range_init(void)
+@@ -92,3 +93,5 @@ sync_range_init(void)
  
  	add_command(&sync_range_cmd);
  }
 +
 +#endif
--- 
-2.16.1
-
diff --git a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0002-include-include-xfs-linux.h-after-sys-mman.h.patch b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0002-include-include-xfs-linux.h-after-sys-mman.h.patch
new file mode 100644
index 0000000..f924cd1
--- /dev/null
+++ b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/0002-include-include-xfs-linux.h-after-sys-mman.h.patch
@@ -0,0 +1,33 @@
+From 11a42df394de3dc520e72a016296dcc6dea02a7a Mon Sep 17 00:00:00 2001
+From: Khem Raj <raj.khem@gmail.com>
+Date: Thu, 23 Aug 2018 05:33:57 +0000
+Subject: [PATCH] include include/xfs/linux.h after <sys/mman.h>
+
+This helps compiling with musl which goes ahead and undefines MAP_SYNC
+for mips and other architectures where its not wired in kernel
+
+Upstream-Status: Pending
+
+Signed-off-by: Khem Raj <raj.khem@gmail.com>
+---
+ io/mmap.c | 5 +++--
+ 1 file changed, 3 insertions(+), 2 deletions(-)
+
+diff --git a/io/mmap.c b/io/mmap.c
+index dbfcca5..ca00df1 100644
+--- a/io/mmap.c
++++ b/io/mmap.c
+@@ -4,10 +4,11 @@
+  * All Rights Reserved.
+  */
+ 
+-#include "command.h"
+-#include "input.h"
+ #include <sys/mman.h>
+ #include <signal.h>
++
++#include "command.h"
++#include "input.h"
+ #include "init.h"
+ #include "io.h"
+ 
diff --git a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/disable-xfs_scrub-build.patch b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/disable-xfs_scrub-build.patch
new file mode 100644
index 0000000..c07b4b5
--- /dev/null
+++ b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/files/disable-xfs_scrub-build.patch
@@ -0,0 +1,30 @@
+From 2bd40e5ed4df0b0a42beff8806b1ec5daa372c48 Mon Sep 17 00:00:00 2001
+From: Yi Zhao <yi.zhao@windriver.com>
+Date: Thu, 19 Jul 2018 16:49:41 +0800
+Subject: [PATCH] Disable xfs_scrub build
+
+Disable xfs_scrub build since it is experimental.
+
+Upstream-Status: Inappropriate [embedded specific]
+
+Signed-off-by: Yi Zhao <yi.zhao@windriver.com>
+---
+ Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/Makefile b/Makefile
+index 7ddfa31..cd60319 100644
+--- a/Makefile
++++ b/Makefile
+@@ -48,7 +48,7 @@ LIBFROG_SUBDIR = libfrog
+ DLIB_SUBDIRS = libxlog libxcmd libhandle
+ LIB_SUBDIRS = libxfs $(DLIB_SUBDIRS)
+ TOOL_SUBDIRS = copy db estimate fsck growfs io logprint mkfs quota \
+-		mdrestore repair rtcp m4 man doc debian spaceman scrub
++		mdrestore repair rtcp m4 man doc debian spaceman
+ 
+ ifneq ("$(PKG_PLATFORM)","darwin")
+ TOOL_SUBDIRS += fsr
+-- 
+2.7.4
+
diff --git a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.14.0.bb b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.18.0.bb
similarity index 77%
rename from meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.14.0.bb
rename to meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.18.0.bb
index 5d76afe..0a1bacb 100644
--- a/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.14.0.bb
+++ b/meta-openembedded/meta-filesystems/recipes-utils/xfsprogs/xfsprogs_4.18.0.bb
@@ -3,14 +3,18 @@
 SECTION = "base"
 LICENSE = "GPLv2 & LGPLv2.1"
 LICENSE_libhandle = "LGPLv2.1"
-LIC_FILES_CHKSUM = "file://doc/COPYING;md5=102f7fec3d53c7c8f0b7baf9bf9d76a8"
+LIC_FILES_CHKSUM = "file://LICENSES/GPL-2.0;md5=74274e8a218423e49eefdea80bc55038 \
+                    file://LICENSES/LGPL-2.1;md5=b370887980db5dd40659b50909238dbd"
 DEPENDS = "util-linux util-linux-native"
 SRC_URI = "https://www.kernel.org/pub/linux/utils/fs/xfs/xfsprogs/${BP}.tar.xz \
            file://remove_flags_from_build_flags.patch \
            file://0001-build-Check-for-sync_file_range-libc-function.patch \
+           file://disable-xfs_scrub-build.patch \
+           file://0001-Check-for-MAP_SYNC-in-sys-mman.h.patch \
+           file://0002-include-include-xfs-linux.h-after-sys-mman.h.patch \
            "
-SRC_URI[md5sum] = "2d50e3751cc98e6c9364bc3d2297b9fd"
-SRC_URI[sha256sum] = "b1b710b268bc95d6f45eca06e1262c29eb38865a19cd4404e48ba446e043b7ec"
+SRC_URI[md5sum] = "5f80b631b68df89a8b9283307e96d2e8"
+SRC_URI[sha256sum] = "397dc96f51aeeff73d021d3418d3172377b2685f2740ca60525096c070aa3df1"
 
 inherit autotools-brokensep
 
@@ -47,13 +51,14 @@
 
 EXTRA_OEMAKE = "DIST_ROOT='${D}'"
 
-do_configure_prepend () {
+do_configure () {
     export BUILD_CC="${BUILD_CC} ${BUILD_CFLAGS}"
     # Prevent Makefile from calling configure without arguments,
     # when do_configure gets called for a second time.
     rm -f ${B}/include/builddefs ${B}/include/platform_defs.h ${B}/configure
     # Recreate configure script.
     oe_runmake configure
+    oe_runconf
 }
 
 do_install_append() {