reset upstream subtrees to yocto 2.6

Reset the following subtrees on thud HEAD:

  poky: 87e3a9739d
  meta-openembedded: 6094ae18c8
  meta-security: 31dc4e7532
  meta-raspberrypi: a48743dc36
  meta-xilinx: c42016e2e6

Also re-apply backports that didn't make it into thud:
  poky:
    17726d0 systemd-systemctl-native: handle Install wildcards

  meta-openembedded:
    4321a5d libtinyxml2: update to 7.0.1
    042f0a3 libcereal: Add native and nativesdk classes
    e23284f libcereal: Allow empty package
    030e8d4 rsyslog: curl-less build with fmhttp PACKAGECONFIG
    179a1b9 gtest: update to 1.8.1

Squashed OpenBMC subtree compatibility updates:
  meta-aspeed:
    Brad Bishop (1):
          aspeed: add yocto 2.6 compatibility

  meta-ibm:
    Brad Bishop (1):
          ibm: prepare for yocto 2.6

  meta-ingrasys:
    Brad Bishop (1):
          ingrasys: set layer compatibility to yocto 2.6

  meta-openpower:
    Brad Bishop (1):
          openpower: set layer compatibility to yocto 2.6

  meta-phosphor:
    Brad Bishop (3):
          phosphor: set layer compatibility to thud
          phosphor: libgpg-error: drop patches
          phosphor: react to fitimage artifact rename

    Ed Tanous (4):
          Dropbear: upgrade options for latest upgrade
          yocto2.6: update openssl options
          busybox: remove upstream watchdog patch
          systemd: Rebase CONFIG_CGROUP_BPF patch

Change-Id: I7b1fe71cca880d0372a82d94b5fd785323e3a9e7
Signed-off-by: Brad Bishop <bradleyb@fuzziesquirrel.com>
diff --git a/poky/meta/recipes-devtools/python/python3_3.5.6.bb b/poky/meta/recipes-devtools/python/python3_3.5.6.bb
new file mode 100644
index 0000000..31f8ead
--- /dev/null
+++ b/poky/meta/recipes-devtools/python/python3_3.5.6.bb
@@ -0,0 +1,329 @@
+require recipes-devtools/python/python3.inc
+
+DEPENDS = "python3-native libffi bzip2 gdbm openssl \
+           sqlite3 zlib virtual/libintl xz qemu-native \
+           qemu-helper-native virtual/crypt"
+
+DISTRO_SRC_URI ?= "file://sitecustomize.py"
+DISTRO_SRC_URI_linuxstdbase = ""
+SRC_URI = "http://www.python.org/ftp/python/${PV}/Python-${PV}.tar.xz \
+file://python-config.patch \
+file://030-fixup-include-dirs.patch \
+file://070-dont-clean-ipkg-install.patch \
+file://080-distutils-dont_adjust_files.patch \
+file://130-readline-setup.patch \
+file://150-fix-setupterm.patch \
+file://0001-h2py-Fix-issue-13032-where-it-fails-with-UnicodeDeco.patch \
+file://tweak-MULTIARCH-for-powerpc-linux-gnuspe.patch \
+file://support_SOURCE_DATE_EPOCH_in_py_compile.patch \
+${DISTRO_SRC_URI} \
+"
+
+SRC_URI += "\
+            file://03-fix-tkinter-detection.patch \
+            file://avoid_warning_about_tkinter.patch \
+            file://cgi_py.patch \
+            file://host_include_contamination.patch \
+            file://python-3.3-multilib.patch \
+            file://sysroot-include-headers.patch \
+            file://unixccompiler.patch \
+            file://avoid-ncursesw-include-path.patch \
+            file://python3-use-CROSSPYTHONPATH-for-PYTHON_FOR_BUILD.patch \
+            file://sysconfig.py-add-_PYTHON_PROJECT_SRC.patch \
+            file://setup.py-check-cross_compiling-when-get-FLAGS.patch \
+            file://configure.ac-fix-LIBPL.patch \
+            file://0001-Issue-21272-Use-_sysconfigdata.py-to-initialize-dist.patch \
+            file://pass-missing-libraries-to-Extension-for-mul.patch \
+            file://Use-correct-CFLAGS-for-extensions-when-cross-compili.patch \
+            file://0002-Makefile-add-target-to-split-profile-generation.patch \
+            file://float-endian.patch \
+            file://ftplib.patch \
+            file://signal.patch \
+            file://0001-Issue-28043-SSLContext-has-improved-default-settings.patch \
+            file://0002-bpo-29136-Add-TLS-1.3-cipher-suites-and-OP_NO_TLSv1_.patch \
+            file://0003-bpo-32947-Fixes-for-TLS-1.3-and-OpenSSL-1.1.1-GH-876.patch \
+            file://0004-bpo-33570-TLS-1.3-ciphers-for-OpenSSL-1.1.1-GH-6976.patch \
+            file://0005-bpo-30714-ALPN-changes-for-OpenSSL-1.1.0f-2305.patch \
+            file://run-ptest \
+           "
+
+inherit multilib_header python3native update-alternatives qemu ptest
+
+MULTILIB_SUFFIX = "${@d.getVar('base_libdir',1).split('/')[-1]}"
+
+ALTERNATIVE_${PN}-dev = "python-config"
+ALTERNATIVE_LINK_NAME[python-config] = "${bindir}/python${PYTHON_BINABI}-config"
+ALTERNATIVE_TARGET[python-config] = "${bindir}/python${PYTHON_BINABI}-config-${MULTILIB_SUFFIX}"
+
+CONFIGUREOPTS += " --with-system-ffi "
+
+CACHED_CONFIGUREVARS = "ac_cv_have_chflags=no \
+                ac_cv_have_lchflags=no \
+                ac_cv_have_long_long_format=yes \
+                ac_cv_buggy_getaddrinfo=no \
+                ac_cv_file__dev_ptmx=yes \
+                ac_cv_file__dev_ptc=no \
+"
+
+TARGET_CC_ARCH += "-DNDEBUG -fno-inline"
+SDK_CC_ARCH += "-DNDEBUG -fno-inline"
+EXTRA_OEMAKE += "CROSS_COMPILE=yes"
+EXTRA_OECONF += "CROSSPYTHONPATH=${STAGING_LIBDIR_NATIVE}/python${PYTHON_MAJMIN}/lib-dynload/ --without-ensurepip"
+
+PYTHON3_PROFILE_TASK ?= "./python -m test.regrtest --pgo test_grammar test_opcodes test_dict test_builtin test_exceptions test_types test_support || true"
+
+export CROSS_COMPILE = "${TARGET_PREFIX}"
+export CCSHARED = "-fPIC"
+
+# Fix cross compilation of different modules
+export CROSSPYTHONPATH = "${STAGING_LIBDIR_NATIVE}/python${PYTHON_MAJMIN}/lib-dynload/:${B}/build/lib.linux-${TARGET_ARCH}-${PYTHON_MAJMIN}:${S}/Lib:${S}/Lib/plat-linux"
+
+PACKAGECONFIG ??= "readline ${@bb.utils.contains('MACHINE_FEATURES', 'qemu-usermode', 'pgo', '', d)}"
+PACKAGECONFIG[readline] = ",,readline"
+# Use profile guided optimisation by running PyBench inside qemu-user
+PACKAGECONFIG[pgo] = "--enable-optimizations"
+
+do_configure_append() {
+	rm -f ${S}/Makefile.orig
+}
+
+run_make() {
+	oe_runmake PGEN=${STAGING_BINDIR_NATIVE}/python3-native/pgen \
+		HOSTPYTHON=${STAGING_BINDIR_NATIVE}/python3-native/python3 \
+		STAGING_LIBDIR=${STAGING_LIBDIR} \
+		STAGING_INCDIR=${STAGING_INCDIR} \
+		STAGING_BASELIBDIR=${STAGING_BASELIBDIR} \
+		LIB=${baselib} \
+		ARCH=${TARGET_ARCH} \
+		OPT="${CFLAGS}" \
+		"$@"
+}
+
+do_compile() {
+	# regenerate platform specific files, because they depend on system headers
+	cd ${S}/Lib/plat-linux*
+	include=${STAGING_INCDIR} ${STAGING_BINDIR_NATIVE}/python3-native/python3 \
+		${S}/Tools/scripts/h2py.py -i '(u_long)' \
+		${STAGING_INCDIR}/dlfcn.h \
+		${STAGING_INCDIR}/linux/cdrom.h \
+		${STAGING_INCDIR}/netinet/in.h \
+		${STAGING_INCDIR}/sys/types.h
+	sed -e 's,${STAGING_DIR_HOST},,g' -i *.py
+	cd -
+
+	# remove any bogus LD_LIBRARY_PATH
+	sed -i -e s,RUNSHARED=.*,RUNSHARED=, Makefile
+
+	if [ ! -f Makefile.orig ]; then
+		install -m 0644 Makefile Makefile.orig
+	fi
+	sed -i -e 's,^CONFIGURE_LDFLAGS=.*,CONFIGURE_LDFLAGS=-L. -L${STAGING_LIBDIR},g' \
+		-e 's,libdir=${libdir},libdir=${STAGING_LIBDIR},g' \
+		-e 's,libexecdir=${libexecdir},libexecdir=${STAGING_DIR_HOST}${libexecdir},g' \
+		-e 's,^LIBDIR=.*,LIBDIR=${STAGING_LIBDIR},g' \
+		-e 's,includedir=${includedir},includedir=${STAGING_INCDIR},g' \
+		-e 's,^INCLUDEDIR=.*,INCLUDE=${STAGING_INCDIR},g' \
+		-e 's,^CONFINCLUDEDIR=.*,CONFINCLUDE=${STAGING_INCDIR},g' \
+		Makefile
+	# save copy of it now, because if we do it in do_install and 
+	# then call do_install twice we get Makefile.orig == Makefile.sysroot
+	install -m 0644 Makefile Makefile.sysroot
+
+	if ${@bb.utils.contains('PACKAGECONFIG', 'pgo', 'true', 'false', d)}; then
+		run_make profile-opt
+		qemu_binary="${@qemu_wrapper_cmdline(d, '${STAGING_DIR_TARGET}', ['${B}', '${STAGING_DIR_TARGET}/${base_libdir}'])}"
+		cat >pgo-wrapper <<EOF
+#!/bin/sh
+cd ${B}
+$qemu_binary "\$@"
+EOF
+		chmod +x pgo-wrapper
+		bbnote Gathering profiling data
+		./pgo-wrapper ${PYTHON3_PROFILE_TASK}
+		bbnote Profiling data gathered, rebuilding
+		run_make clean_and_use_profile
+	else
+		run_make libpython3.so
+		run_make
+	fi
+}
+
+do_install() {
+	# make install needs the original Makefile, or otherwise the inclues would
+	# go to ${D}${STAGING...}/...
+	install -m 0644 Makefile.orig Makefile
+
+	install -d ${D}${libdir}/pkgconfig
+	install -d ${D}${libdir}/python${PYTHON_MAJMIN}/config
+
+	# rerun the build once again with original makefile this time
+	# run install in a separate step to avoid compile/install race
+	if ${@bb.utils.contains('PACKAGECONFIG', 'pgo', 'true', 'false', d)}; then
+		run_make DESTDIR=${D} LIBDIR=${libdir} build_all_use_profile
+	else
+		run_make DESTDIR=${D} LIBDIR=${libdir}
+	fi
+
+	run_make DESTDIR=${D} LIBDIR=${libdir} install
+
+	# avoid conflict with 2to3 from Python 2
+	rm -f ${D}/${bindir}/2to3
+
+	install -m 0644 Makefile.sysroot ${D}/${libdir}/python${PYTHON_MAJMIN}/config/Makefile
+	install -m 0644 Makefile.sysroot ${D}/${libdir}/python${PYTHON_MAJMIN}/config-${PYTHON_MAJMIN}${PYTHON_ABI}/Makefile
+
+	if [ -e ${WORKDIR}/sitecustomize.py ]; then
+		install -m 0644 ${WORKDIR}/sitecustomize.py ${D}/${libdir}/python${PYTHON_MAJMIN}
+	fi
+
+	oe_multilib_header python${PYTHON_BINABI}/pyconfig.h
+}
+
+do_install_append_class-nativesdk () {
+	create_wrapper ${D}${bindir}/python${PYTHON_MAJMIN} PYTHONHOME='${prefix}' TERMINFO_DIRS='${sysconfdir}/terminfo:/etc/terminfo:/usr/share/terminfo:/usr/share/misc/terminfo:/lib/terminfo' PYTHONNOUSERSITE='1'
+}
+
+SSTATE_SCAN_FILES += "Makefile"
+PACKAGE_PREPROCESS_FUNCS += "py_package_preprocess"
+
+py_package_preprocess () {
+	# copy back the old Makefile to fix target package
+	install -m 0644 ${B}/Makefile.orig ${PKGD}/${libdir}/python${PYTHON_MAJMIN}/config/Makefile
+	install -m 0644 ${B}/Makefile.orig ${PKGD}/${libdir}/python${PYTHON_MAJMIN}/config-${PYTHON_MAJMIN}${PYTHON_ABI}/Makefile
+	# Remove references to buildmachine paths in target Makefile and _sysconfigdata
+	sed -i -e 's:--sysroot=${STAGING_DIR_TARGET}::g' -e s:'--with-libtool-sysroot=${STAGING_DIR_TARGET}'::g \
+		-e 's|${DEBUG_PREFIX_MAP}||g' \
+		-e 's:${HOSTTOOLS_DIR}/::g' \
+		-e 's:${RECIPE_SYSROOT_NATIVE}::g' \
+		-e 's:${RECIPE_SYSROOT}::g' \
+		-e 's:${BASE_WORKDIR}/${MULTIMACH_TARGET_SYS}::g' \
+		${PKGD}/${libdir}/python${PYTHON_MAJMIN}/config/Makefile \
+		${PKGD}/${libdir}/python${PYTHON_MAJMIN}/config-${PYTHON_MAJMIN}${PYTHON_ABI}/Makefile \
+		${PKGD}/${libdir}/python${PYTHON_MAJMIN}/_sysconfigdata.py \
+		${PKGD}/${bindir}/python${PYTHON_BINABI}-config
+
+	# Recompile _sysconfigdata after modifying it
+	cd ${PKGD}
+	${STAGING_BINDIR_NATIVE}/${PYTHON_PN}-native/${PYTHON_PN} \
+	     -c "from py_compile import compile; compile('./${libdir}/python${PYTHON_MAJMIN}/_sysconfigdata.py')"
+	${STAGING_BINDIR_NATIVE}/${PYTHON_PN}-native/${PYTHON_PN} \
+	     -c "from py_compile import compile; compile('./${libdir}/python${PYTHON_MAJMIN}/_sysconfigdata.py', optimize=1)"
+	${STAGING_BINDIR_NATIVE}/${PYTHON_PN}-native/${PYTHON_PN} \
+	     -c "from py_compile import compile; compile('./${libdir}/python${PYTHON_MAJMIN}/_sysconfigdata.py', optimize=2)"
+	cd -
+
+	mv ${PKGD}/${bindir}/python${PYTHON_BINABI}-config ${PKGD}/${bindir}/python${PYTHON_BINABI}-config-${MULTILIB_SUFFIX}
+}
+
+PACKAGES_remove = "${PN}"
+
+# manual dependency additions
+RPROVIDES_${PN}-modules = "${PN}"
+RRECOMMENDS_${PN}-core_append_class-nativesdk = " nativesdk-python3-modules"
+RRECOMMENDS_${PN}-crypt = "openssl ca-certificates"
+
+FILES_${PN}-2to3 += "${bindir}/2to3-${PYTHON_MAJMIN}"
+FILES_${PN}-pydoc += "${bindir}/pydoc${PYTHON_MAJMIN} ${bindir}/pydoc3"
+FILES_${PN}-idle += "${bindir}/idle3 ${bindir}/idle${PYTHON_MAJMIN}"
+
+# provide python-pyvenv from python3-venv
+RPROVIDES_${PN}-venv += "${PN}-pyvenv"
+
+# package libpython3
+PACKAGES =+ "libpython3 libpython3-staticdev"
+FILES_libpython3 = "${libdir}/libpython*.so.*"
+FILES_libpython3-staticdev += "${libdir}/python${PYTHON_MAJMIN}/config-${PYTHON_BINABI}/libpython${PYTHON_BINABI}.a"
+INSANE_SKIP_${PN}-dev += "dev-elf"
+
+# catch all the rest (unsorted)
+PACKAGES += "${PN}-misc"
+RDEPENDS_${PN}-misc += "${PN}-core ${PN}-email ${PN}-codecs"
+RDEPENDS_${PN}-modules += "${PN}-misc"
+FILES_${PN}-misc = "${libdir}/python${PYTHON_MAJMIN}"
+
+# catch manpage
+PACKAGES += "${PN}-man"
+FILES_${PN}-man = "${datadir}/man"
+
+RDEPENDS_${PN}-ptest = "${PN}-modules ${PN}-tests unzip bzip2"
+
+RDEPENDS_${PN}-dev = ""
+
+BBCLASSEXTEND = "nativesdk"
+
+# We want bytecode precompiled .py files (.pyc's) by default
+# but the user may set it on their own conf
+INCLUDE_PYCS ?= "1"
+
+python(){
+    import collections, json
+
+    filename = os.path.join(d.getVar('THISDIR'), 'python3', 'python3-manifest.json')
+    # This python changes the datastore based on the contents of a file, so mark
+    # that dependency.
+    bb.parse.mark_dependency(d, filename)
+
+    with open(filename) as manifest_file:
+        python_manifest=json.load(manifest_file, object_pairs_hook=collections.OrderedDict)
+
+    include_pycs = d.getVar('INCLUDE_PYCS')
+
+    packages = d.getVar('PACKAGES').split()
+    pn = d.getVar('PN')
+
+    newpackages=[]
+    for key in python_manifest:
+        pypackage= pn + '-' + key
+
+        if pypackage not in packages:
+            # We need to prepend, otherwise python-misc gets everything
+            # so we use a new variable
+            newpackages.append(pypackage)
+
+        # "Build" python's manifest FILES, RDEPENDS and SUMMARY
+        d.setVar('FILES_' + pypackage, '')
+        for value in python_manifest[key]['files']:
+            d.appendVar('FILES_' + pypackage, ' ' + value)
+
+    	# Add cached files
+        if include_pycs == '1':
+            for value in python_manifest[key]['cached']:
+                    d.appendVar('FILES_' + pypackage, ' ' + value)
+
+        for value in python_manifest[key]['rdepends']:
+            # Make it work with or without $PN
+            if '${PN}' in value:
+                value=value.split('-')[1]
+            d.appendVar('RDEPENDS_' + pypackage, ' ' + pn + '-' + value)
+        d.setVar('SUMMARY_' + pypackage, python_manifest[key]['summary'])
+
+    # Prepending so to avoid python-misc getting everything
+    packages = newpackages + packages
+    d.setVar('PACKAGES', ' '.join(packages))
+    d.setVar('ALLOW_EMPTY_${PN}-modules', '1')
+}
+
+# Files needed to create a new manifest
+SRC_URI += "file://create_manifest3.py file://get_module_deps3.py file://python3-manifest.json"
+
+do_create_manifest() {
+    # This task should be run with every new release of Python.
+    # We must ensure that PACKAGECONFIG enables everything when creating
+    # a new manifest, this is to base our new manifest on a complete
+    # native python build, containing all dependencies, otherwise the task
+    # wont be able to find the required files.
+    # e.g. BerkeleyDB is an optional build dependency so it may or may not
+    # be present, we must ensure it is.
+
+    cd ${WORKDIR}
+    # This needs to be executed by python-native and NOT by HOST's python
+    nativepython3 create_manifest3.py ${PYTHON_MAJMIN}
+    cp python3-manifest.json.new ${THISDIR}/python3/python3-manifest.json
+}
+
+# bitbake python -c create_manifest
+addtask do_create_manifest
+
+# Make sure we have native python ready when we create a new manifest
+do_create_manifest[depends] += "python3:do_prepare_recipe_sysroot"
+do_create_manifest[depends] += "python3:do_patch"